GitHub - cistrome/MIRA: Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.

Python package for analysis of multiomic single cell RNA-seq and ATAC-seq. - GitHub - cistrome/MIRA: Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.

Integrative analysis of RNA-seq and ChIP-seq data - Genevia Technologies

MultiMAP: dimensionality reduction and integration of multimodal data, Genome Biology

MIRA: Joint regulatory modeling of multimodal expression and chromatin accessibility in single cells

GitHub - zhongmicai/awesome_single_cell

Diversification of reprogramming trajectories revealed by parallel single- cell transcriptome and chromatin accessibility sequencing

GitHub - cistrome/MIRA: Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.

Scarf enables a highly memory-efficient analysis of large-scale single-cell genomics data

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia

Cistrome Data Browser on X: Our MIRA paper ( is out! MIRA is a Python package for single cell RNA-seq, ATAC-seq, and multimodal RNA-seq + ATAC-seq analysis. #singlecell #chromatin #epigenetics #NCIITCR 1/9 /

CFCE-DFCI (@CFCE_DanaFarber) / X

RNA-seq_notes/README.md at master · mdozmorov/RNA-seq_notes · GitHub